Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs62193003 chr2:242535187 G/A 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs62193004 chr2:242535385 G/A 4.67E-11 176 25.77 25 10.3 KM Plot
PCPG rs62193006 chr2:242536585 G/A 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs62193468 chr2:242577916 T/C 9.01E-11 173 25.67 25 10.3 KM Plot
PCPG rs62193473 chr2:242579813 C/T 9.01E-11 173 25.67 25 10.3 KM Plot
PCPG rs62226152 chr21:34596750 C/T 0.000218 176 21.9 30.93 25.17 KM Plot
PCPG rs62238886 chr22:32141311 G/A 9.79E-6 178 25.87 12.57 1.3 KM Plot
PCPG rs62254979 chr3:80400835 C/T 5.33E-7 175 25.77 23.48 19.87 KM Plot
PCPG rs62266920 chr3:129048617 G/A 0.000101 174 25.28 30.33 19.87 KM Plot
PCPG rs62266921 chr3:129048654 T/C 0.000317 176 25.4 31.9 9.6 KM Plot
PCPG rs62266925 chr3:129052586 G/A 3.82E-5 176 25.53 25.27 9.6 KM Plot
PCPG rs62266926 chr3:129052933 G/A 0.000333 177 25.53 25.27 10.3 KM Plot
PCPG rs62266928 chr3:129056126 T/C 0.000333 176 25.67 25.27 10.3 KM Plot
PCPG rs62266930 chr3:129056788 A/G 0.000394 174 25.67 22.28 10.3 KM Plot
PCPG rs62266932 chr3:129057053 T/C 5.05E-5 172 25.4 25 9.6 KM Plot